File corrupted while reading record

[avankessel]

Starting today I’m getting exceptions during cargo run:
java.sql.SQLException: Cannot create PoolableConnectionFactory (File corrupted while reading record: null. Possible solution: use the recovery tool [90030-206])
[INFO] [talledLocalContainer] at org.apache.tomcat.dbcp.dbcp2.BasicDataSource.createPoolableConnectionFactory(BasicDataSource.java:653)
[INFO] [talledLocalContainer] at org.apache.tomcat.dbcp.dbcp2.BasicDataSource.createDataSource(BasicDataSource.java:532)
[INFO] [talledLocalContainer] at org.apache.tomcat.dbcp.dbcp2.BasicDataSource.getLogWriter(BasicDataSource.java:1057)
[INFO] [talledLocalContainer] at org.apache.tomcat.dbcp.dbcp2.BasicDataSourceFactory.createDataSource(BasicDataSourceFactory.java:308)
[INFO] [talledLocalContainer] at org.apache.tomcat.dbcp.dbcp2.BasicDataSourceFactory.getObjectInstance(BasicDataSourceFactory.java:399)
[INFO] [talledLocalContainer] at org.apache.naming.factory.FactoryBase.getObjectInstance(FactoryBase.java:96)
[INFO] [talledLocalContainer] at javax.naming.spi.NamingManager.getObjectInstance(NamingManager.java:331)
[INFO] [talledLocalContainer] at org.apache.naming.NamingContext.lookup(NamingContext.java:864)
[INFO] [talledLocalContainer] at org.apache.naming.NamingContext.lookup(NamingContext.java:158)
[INFO] [talledLocalContainer] at org.apache.naming.NamingContext.lookup(NamingContext.java:850)
[INFO] [talledLocalContainer] at org.apache.naming.NamingContext.lookup(NamingContext.java:172)
[INFO] [talledLocalContainer] at org.apache.catalina.core.NamingContextListener.addResource(NamingContextListener.java:1013)
[INFO] [talledLocalContainer] at org.apache.catalina.core.NamingContextListener.createNamingContext(NamingContextListener.java:552)
[INFO] [talledLocalContainer] at org.apache.catalina.core.NamingContextListener.lifecycleEvent(NamingContextListener.java:245)
[INFO] [talledLocalContainer] at org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:123)
[INFO] [talledLocalContainer] at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5135)
[INFO] [talledLocalContainer] at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
[INFO] [talledLocalContainer] at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:726)
[INFO] [talledLocalContainer] at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:698)
[INFO] [talledLocalContainer] at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:696)
[INFO] [talledLocalContainer] at org.apache.catalina.startup.HostConfig.deployDescriptor(HostConfig.java:690)
[INFO] [talledLocalContainer] at org.apache.catalina.startup.HostConfig$DeployDescriptor.run(HostConfig.java:1889)
[INFO] [talledLocalContainer] at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
[INFO] [talledLocalContainer] at java.util.concurrent.FutureTask.run(FutureTask.java:266)
[INFO] [talledLocalContainer] at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75)
[INFO] [talledLocalContainer] at java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:112)
[INFO] [talledLocalContainer] at org.apache.catalina.startup.HostConfig.deployDescriptors(HostConfig.java:583)
[INFO] [talledLocalContainer] at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:473)
[INFO] [talledLocalContainer] at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1618)
[INFO] [talledLocalContainer] at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:319)
[INFO] [talledLocalContainer] at org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:123)
[INFO] [talledLocalContainer] at org.apache.catalina.util.LifecycleBase.setStateInternal(LifecycleBase.java:423)
[INFO] [talledLocalContainer] at org.apache.catalina.util.LifecycleBase.setState(LifecycleBase.java:366)
[INFO] [talledLocalContainer] at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:946)
[INFO] [talledLocalContainer] at org.apache.catalina.core.StandardHost.startInternal(StandardHost.java:835)
[INFO] [talledLocalContainer] at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
[INFO] [talledLocalContainer] at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1396)
[INFO] [talledLocalContainer] at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1386)
[INFO] [talledLocalContainer] at java.util.concurrent.FutureTask.run(FutureTask.java:266)
[INFO] [talledLocalContainer] at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75)
[INFO] [talledLocalContainer] at java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:134)
[INFO] [talledLocalContainer] at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:919)
[INFO] [talledLocalContainer] at org.apache.catalina.core.StandardEngine.startInternal(StandardEngine.java:263)
[INFO] [talledLocalContainer] at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
[INFO] [talledLocalContainer] at org.apache.catalina.core.StandardService.startInternal(StandardService.java:432)
[INFO] [talledLocalContainer] at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
[INFO] [talledLocalContainer] at org.apache.catalina.core.StandardServer.startInternal(StandardServer.java:927)
[INFO] [talledLocalContainer] at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
[INFO] [talledLocalContainer] at org.apache.catalina.startup.Catalina.start(Catalina.java:772)
[INFO] [talledLocalContainer] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
[INFO] [talledLocalContainer] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
[INFO] [talledLocalContainer] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[INFO] [talledLocalContainer] at java.lang.reflect.Method.invoke(Method.java:498)
[INFO] [talledLocalContainer] at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:345)
[INFO] [talledLocalContainer] at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:476)
[INFO] [talledLocalContainer] Caused by: org.h2.jdbc.JdbcSQLNonTransientConnectionException: File corrupted while reading record: null. Possible solution: use the recovery tool [90030-206]
[INFO] [talledLocalContainer] at org.h2.message.DbException.getJdbcSQLException(DbException.java:697)
[INFO] [talledLocalContainer] at org.h2.message.DbException.getJdbcSQLException(DbException.java:496)
[INFO] [talledLocalContainer] at org.h2.message.DbException.get(DbException.java:216)
[INFO] [talledLocalContainer] at org.h2.mvstore.db.Store.convertMVStoreException(Store.java:159)
[INFO] [talledLocalContainer] at org.h2.mvstore.db.Store.(Store.java:140)
[INFO] [talledLocalContainer] at org.h2.engine.Database.(Database.java:324)
[INFO] [talledLocalContainer] at org.h2.engine.Engine.openSession(Engine.java:92)
[INFO] [talledLocalContainer] at org.h2.engine.Engine.openSession(Engine.java:222)
[INFO] [talledLocalContainer] at org.h2.engine.Engine.createSession(Engine.java:201)
[INFO] [talledLocalContainer] at org.h2.engine.SessionRemote.connectEmbeddedOrServer(SessionRemote.java:338)
[INFO] [talledLocalContainer] at org.h2.jdbc.JdbcConnection.(JdbcConnection.java:117)
[INFO] [talledLocalContainer] at org.h2.Driver.connect(Driver.java:59)
[INFO] [talledLocalContainer] at org.apache.tomcat.dbcp.dbcp2.DriverConnectionFactory.createConnection(DriverConnectionFactory.java:52)
[INFO] [talledLocalContainer] at org.apache.tomcat.dbcp.dbcp2.PoolableConnectionFactory.makeObject(PoolableConnectionFactory.java:415)
[INFO] [talledLocalContainer] at org.apache.tomcat.dbcp.dbcp2.BasicDataSource.validateConnectionFactory(BasicDataSource.java:111)
[INFO] [talledLocalContainer] at org.apache.tomcat.dbcp.dbcp2.BasicDataSource.createPoolableConnectionFactory(BasicDataSource.java:649)

It looks like my repository is corrupted. Has anybody an idea what to do?

[machak]

that looks like your local environment…(based on the fact you are using H2 database)…
just run mvn clean and restart your cargo instance.

[avankessel]

Hi Machak,

Thanks for your suggestion. Unfortunately, it did not solve the problem. This is the first part of the stack trace:

[INFO] [talledLocalContainer] Tomcat 9.x starting…

[INFO] [stalledLocalDeployer] Deploying [C:\Users\Ad\IdeaProjects\hippo-team\issc-hippo-ulhippo/cms/target/cms] to [C:\Users\Ad\IdeaProjects\hippo-team\issc-hippo-ulhippo\target/tomcat9x\webapps]…

[INFO] [stalledLocalDeployer] Deploying WAR by creating Tomcat context XML file in [C:\Users\Ad\IdeaProjects\hippo-team\issc-hippo-ulhippo\target\tomcat9x\conf\Catalina\localhost]…

[INFO] [talledLocalContainer] Listening for transport dt_socket at address: 8000

[WARNING] [talledLocalContainer] 02-Jun-2022 09:04:12.899 WARNING [main] org.apache.tomcat.util.digester.SetPropertiesRule.begin Match [Server/Service/Connector] failed to set property [emptySessionPath] to [false]

[INFO] [talledLocalContainer] 02-Jun-2022 09:04:12.938 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent The Apache Tomcat Native library which allows using OpenSSL was not found on the java.library.path: [C:\Program Files\Java\jdk1.8.0_321\jre\bin;C:\Windows\Sun\Java\bin;C:\Windows\system32;C:\Windows;C:\Program Files (x86)\Common Files\Oracle\Java\javapath;C:\Program Files (x86)\Eclipse Adoptium\jdk-8.0.312.7-hotspot\bin;C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0;C:\Windows\System32\OpenSSH;C:\Program Files (x86)\NVIDIA Corporation\PhysX\Common;C:\Program Files\NVIDIA Corporation\NVIDIA NvDLISR;C:\Program Files\PuTTY;C:\Program Files\Git\cmd;C:\Program Files\Docker\Docker\resources\bin;C:\ProgramData\DockerDesktop\version-bin;C:\WebDrivers;C:\Program Files\dotnet;C:\Program Files\nodejs;C:\Program Files (x86)\Yarn\bin;C:\Users\Ad\AppData\Local\Microsoft\WindowsApps;C:\Program Files\apache-maven-3.8.4\bin;C:\Users\Ad\AppData\Roaming\npm;C:\Users\Ad\AppData\Local\Yarn\bin;.]

[INFO] [talledLocalContainer] 02-Jun-2022 09:04:13.138 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler [“http-nio-8080”]

[INFO] [talledLocalContainer] 02-Jun-2022 09:04:13.153 INFO [main] org.apache.catalina.startup.Catalina.load Server initialization in [336] milliseconds

[INFO] [talledLocalContainer] 02-Jun-2022 09:04:13.181 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service [Catalina]

[INFO] [talledLocalContainer] 02-Jun-2022 09:04:13.181 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet engine: [Apache Tomcat/9.0.54]

[INFO] [talledLocalContainer] 02-Jun-2022 09:04:13.187 INFO [main] org.apache.catalina.startup.HostConfig.deployDescriptor Deploying deployment descriptor [C:\Users\Ad\IdeaProjects\hippo-team\issc-hippo-ulhippo\target\tomcat9x\conf\Catalina\localhost\site.xml]

[WARNING] [talledLocalContainer] 02-Jun-2022 09:04:19.261 WARNING [main] org.apache.naming.NamingContext.lookup Unexpected exception resolving reference

[INFO] [talledLocalContainer] java.sql.SQLException: Cannot create PoolableConnectionFactory (File corrupted while reading record: null. Possible solution: use the recovery tool [90030-206])

[INFO] [talledLocalContainer] at org.apache.tomcat.dbcp.dbcp2.BasicDataSource.createPoolableConnectionFactory(BasicDataSource.java:653)

[INFO] [talledLocalContainer] at org.apache.tomcat.dbcp.dbcp2.BasicDataSource.createDataSource(BasicDataSource.java:532)

[INFO] [talledLocalContainer] at org.apache.tomcat.dbcp.dbcp2.BasicDataSource.getLogWriter(BasicDataSource.java:1057)

[INFO] [talledLocalContainer] at org.apache.tomcat.dbcp.dbcp2.BasicDataSourceFactory.createDataSource(BasicDataSourceFactory.java:308)

[INFO] [talledLocalContainer] at org.apache.tomcat.dbcp.dbcp2.BasicDataSourceFactory.getObjectInstance(BasicDataSourceFactory.java:399)

[INFO] [talledLocalContainer] at org.apache.naming.factory.FactoryBase.getObjectInstance(FactoryBase.java:96)

[INFO] [talledLocalContainer] at javax.naming.spi.NamingManager.getObjectInstance(NamingManager.java:331)

[INFO] [talledLocalContainer] at org.apache.naming.NamingContext.lookup(NamingContext.java:864)

[INFO] [talledLocalContainer] at org.apache.naming.NamingContext.lookup(NamingContext.java:158)

[INFO] [talledLocalContainer] at org.apache.naming.NamingContext.lookup(NamingContext.java:850)

[INFO] [talledLocalContainer] at org.apache.naming.NamingContext.lookup(NamingContext.java:172)

[INFO] [talledLocalContainer] at org.apache.catalina.core.NamingContextListener.addResource(NamingContextListener.java:1013)

[INFO] [talledLocalContainer] at org.apache.catalina.core.NamingContextListener.createNamingContext(NamingContextListener.java:552)

[INFO] [talledLocalContainer] at org.apache.catalina.core.NamingContextListener.lifecycleEvent(NamingContextListener.java:245)

[INFO] [talledLocalContainer] at org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:123)

[INFO] [talledLocalContainer] at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5135)

[INFO] [talledLocalContainer] at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)

[INFO] [talledLocalContainer] at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:726)

[INFO] [talledLocalContainer] at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:698)

[INFO] [talledLocalContainer] at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:696)

[INFO] [talledLocalContainer] at org.apache.catalina.startup.HostConfig.deployDescriptor(HostConfig.java:690)

[INFO] [talledLocalContainer] at org.apache.catalina.startup.HostConfig$DeployDescriptor.run(HostConfig.java:1889)

[INFO] [talledLocalContainer] at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)

[INFO] [talledLocalContainer] at java.util.concurrent.FutureTask.run(FutureTask.java:266)

[INFO] [talledLocalContainer] at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75)

[INFO] [talledLocalContainer] at java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:112)

[INFO] [talledLocalContainer] at org.apache.catalina.startup.HostConfig.deployDescriptors(HostConfig.java:583)

[INFO] [talledLocalContainer] at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:473)

[INFO] [talledLocalContainer] at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1618)

[INFO] [talledLocalContainer] at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:319)

[INFO] [talledLocalContainer] at org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:123)

[INFO] [talledLocalContainer] at org.apache.catalina.util.LifecycleBase.setStateInternal(LifecycleBase.java:423)

[INFO] [talledLocalContainer] at org.apache.catalina.util.LifecycleBase.setState(LifecycleBase.java:366)

[INFO] [talledLocalContainer] at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:946)

[INFO] [talledLocalContainer] at org.apache.catalina.core.StandardHost.startInternal(StandardHost.java:835)

[INFO] [talledLocalContainer] at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)

[INFO] [talledLocalContainer] at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1396)

[INFO] [talledLocalContainer] at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1386)

[INFO] [talledLocalContainer] at java.util.concurrent.FutureTask.run(FutureTask.java:266)

[INFO] [talledLocalContainer] at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75)

[INFO] [talledLocalContainer] at java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:134)

[INFO] [talledLocalContainer] at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:919)

[INFO] [talledLocalContainer] at org.apache.catalina.core.StandardEngine.startInternal(StandardEngine.java:263)

[INFO] [talledLocalContainer] at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)

[INFO] [talledLocalContainer] at org.apache.catalina.core.StandardService.startInternal(StandardService.java:432)

[INFO] [talledLocalContainer] at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)

[INFO] [talledLocalContainer] at org.apache.catalina.core.StandardServer.startInternal(StandardServer.java:927)

[INFO] [talledLocalContainer] at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)

[INFO] [talledLocalContainer] at org.apache.catalina.startup.Catalina.start(Catalina.java:772)

[INFO] [talledLocalContainer] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

[INFO] [talledLocalContainer] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)

[INFO] [talledLocalContainer] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)

[INFO] [talledLocalContainer] at java.lang.reflect.Method.invoke(Method.java:498)

[INFO] [talledLocalContainer] at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:345)

[INFO] [talledLocalContainer] at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:476)

[INFO] [talledLocalContainer] Caused by: org.h2.jdbc.JdbcSQLNonTransientConnectionException: File corrupted while reading record: null. Possible solution: use the recovery tool [90030-206]

[INFO] [talledLocalContainer] at org.h2.message.DbException.getJdbcSQLException(DbException.java:697)

[INFO] [talledLocalContainer] at org.h2.message.DbException.getJdbcSQLException(DbException.java:496)

[INFO] [talledLocalContainer] at org.h2.message.DbException.get(DbException.java:216)

[INFO] [talledLocalContainer] at org.h2.mvstore.db.Store.convertMVStoreException(Store.java:159)

[INFO] [talledLocalContainer] at org.h2.mvstore.db.Store.(Store.java:140)

[INFO] [talledLocalContainer] at org.h2.engine.Database.(Database.java:324)

[INFO] [talledLocalContainer] at org.h2.engine.Engine.openSession(Engine.java:92)

[INFO] [talledLocalContainer] at org.h2.engine.Engine.openSession(Engine.java:222)

[INFO] [talledLocalContainer] at org.h2.engine.Engine.createSession(Engine.java:201)

[INFO] [talledLocalContainer] at org.h2.engine.SessionRemote.connectEmbeddedOrServer(SessionRemote.java:338)

[INFO] [talledLocalContainer] at org.h2.jdbc.JdbcConnection.(JdbcConnection.java:117)

[INFO] [talledLocalContainer] at org.h2.Driver.connect(Driver.java:59)

[INFO] [talledLocalContainer] at org.apache.tomcat.dbcp.dbcp2.DriverConnectionFactory.createConnection(DriverConnectionFactory.java:52)

[INFO] [talledLocalContainer] at org.apache.tomcat.dbcp.dbcp2.PoolableConnectionFactory.makeObject(PoolableConnectionFactory.java:415)

[INFO] [talledLocalContainer] at org.apache.tomcat.dbcp.dbcp2.BasicDataSource.validateConnectionFactory(BasicDataSource.java:111)

[INFO] [talledLocalContainer] at org.apache.tomcat.dbcp.dbcp2.BasicDataSource.createPoolableConnectionFactory(BasicDataSource.java:649)

[INFO] [talledLocalContainer] … 54 more

[INFO] [talledLocalContainer] Caused by: org.h2.mvstore.MVStoreException: File is corrupted - unable to recover a valid set of chunks [2.0.206/6]

[INFO] [talledLocalContainer] at org.h2.mvstore.DataUtils.newMVStoreException(DataUtils.java:1004)

[INFO] [talledLocalContainer] at org.h2.mvstore.MVStore.readStoreHeader(MVStore.java:1031)

[INFO] [talledLocalContainer] at org.h2.mvstore.MVStore.(MVStore.java:455)

[INFO] [talledLocalContainer] at org.h2.mvstore.MVStore$Builder.open(MVStore.java:4052)

[INFO] [talledLocalContainer] at org.h2.mvstore.db.Store.(Store.java:129)

[INFO] [talledLocalContainer] … 65 more

Perhaps this sheds more light on the problem?

Best regards,

Ad van Kessel

[jeroen.hoffman]

Hi,
Seems a file corruption indeed. If you are using -Drepo.path startup option, your repository is not below target directory and mvn clean won’t clean the local repo. Then just delete wherever repo.path points to.
HTH
Jeroen

[avankessel]

Hi Jeroen,

Again, thanks for the suggestion. I’m not using -Drepo.path startup option. Maybe you can tell me which file should be deleted, and where it’s located?

Best regards,

Ad

[jeroen.hoffman]

I was assuming corruption in the local H2 database, which is file system based.
If you don’t have -Drepo.path then it ends up below ./target/storage and does get cleaned up by mvn clean.

Don’t know now what file this concerns… maybe do try -Drepo.path=mystorage to rule that part out?

[avankessel]

Hi Jeroen,

I fixed the problem by deleting the repository and rebuilding. The mvn clean alone was not enough.

Thanks for the help!

Best regards,

Ad van Kessel